CulebrONT
1.6.0
About CulebrONT
From assembly to correction
Assembly
Optional circularisation
Polishing
Correction
Quality on assemblies
Install
Requirements
Steps for LOCAL installation
1. Pull the build docker virtual machine and obtain test dataset
2. Run the docker container
3. Create a pipeline using the config.yaml file
4. Run CulebrONT
Using standard Snakemake command line
Or using a submit_culebrONT.sh script
Steps for HPC installation
1. How to configure tools_path.yaml
How to build singularity images
2. Preparing
cluster_config.yaml
3. Snakemake profiles
4. Export CulebrONT to PATH
5. Adapt CulebrONT.sbatch
6. Check install
Rules inside CulebrONT
Defining Workflows
How to create a workflow
1. Providing data
2. Choose assemblers, polisher and correctors
3. Choose quality tools
4. Parameters for some specific tools
How to run the workflow
Expert mode (more resources)
Output on CulebrONT
Report
Project Info
Citation
Useful notes
Thanks
License
FAQ
Frequently Asked Questions
CulebrONT
Docs
»
Index
Edit on GitHub
Index
Read the Docs
v: 1.6.0
Versions
latest
1.6.0
1.5.0
1.4
1.3.2
1.3.1
1.3.0
1.2.0
1.1.1
1.1.0
Downloads
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.