Citation

@Authors:

Aurore Comte (IRD) and Julie Orjuela (IRD) developped CulebrONT.

Sebastien Ravel (CIRAD), Florian Charriat (CIRAD) helped on SnakeMake bugs and tricks.

François Sabot (IRD) was involved in coverage tools implementation.

Ndomassi Tando (IRD) helped on Singularity containers creation.

Sebastien Cunnac (IRD) and Tram Vi (IRD) tested on real data and helped for circularisation improvements.

Useful notes

Before launching CulebrONT, you could base-calling of arbitrarily multiplexed libraries across several Minion runs with sequencing quality control and gather the output files by genome for subsequent steps. For that use https://github.com/vibaotram/baseDmux.

Thanks

The authors acknowledge the IRD i-Trop HPC (South Green Platform) at IRD Montpellier for providing HPC resources that have contributed to this work. https://bioinfo.ird.fr/ - http://www.southgreen.fr

Thanks to Yann Delorme for this beautiful logo https://nimarell.github.io/resume

License

Licencied under CeCill-C (http://www.cecill.info/licences/Licence_CeCILL-C_V1-en.html) and GPLv3 Intellectual property belongs to IRD and authors.