Installation

Mandatory installation

CulebrONT uses Python 3.7+ Snakemake 5.10.0+ Singularity 3.10.0+ could be of help (see below)

  • Install or update CulebrONT
git clone https://github.com/SouthGreenPlatform/CulebrONT_pipeline.git
cd CulebrONT_pipeline

Optional Installation

To obtain a clear and correct report, please add also the following dependencies from R:

  • remote::install_github("strengejacke/strengejacke")
  • ‘plotly’, ‘dplyr’, ‘optparse’, ‘htmltools’, ‘rmdformats’, ‘magrittr’, ‘yaml’, ‘png’, ‘here’, ‘htmlwidgets’.

Available data test

A data test Data-Xoo-sub/ is available on https://itrop.ird.fr/culebront_utilities/. Feel free to download it using wget and put it on CulebrONT repertory.